NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070714_100000051

Scaffold Ga0070714_100000051


Overview

Basic Information
Taxon OID3300005435 Open in IMG/M
Scaffold IDGa0070714_100000051 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110289
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (61.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000883Metagenome / Metatranscriptome849Y
F000912Metagenome / Metatranscriptome839Y
F001118Metagenome / Metatranscriptome773Y
F001548Metagenome / Metatranscriptome673Y
F002831Metagenome / Metatranscriptome527Y

Sequences

Protein IDFamilyRBSSequence
Ga0070714_10000005116F001548AGCAGGMKVRAVLWTGMMAYTGFILTGQGLRTFNRLSITEGLLGALTGFLLAIMFTLRERRRQRPGLITYSIAHLPNWKFSPQDRRSDPNGKS*
Ga0070714_10000005158F001118N/AMAVSIDLQNLGDVQLCREITAQVEHVFSDRLGVWRVSITGSRASENWDMCIEGPNGFERSYSLADSAGEHQPELIRRLIAQLVPPSVQP*
Ga0070714_10000005165F000883GGAGMSGQVVLYFEDQADALRFALAAGSVMAGEGGKFTNELLEETSRVARIRLDAVNAGNVKKINPVRVA*
Ga0070714_10000005175F002831GGAMRVPSPEPQDDSHRHHRHAVYASETTGLLLIAFVLLVLTLVRYWHDIHWSWR*
Ga0070714_10000005188F000912GGAMSLDAYVRCTCIKDGRAKKPHPLPDRFTWDESSAPSLTGDPTEREWEAHERWVQQSCEHEGFLVSEFLGNITRAKNVREFLRGLQGDPGPKFPILLKKVVYDGTHTGDWIPVKESPALLREVKLVLASRDILTPGETEFFDSMKRLCEASIETGNPIVF*
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