NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070714_100000339

Scaffold Ga0070714_100000339


Overview

Basic Information
Taxon OID3300005435 Open in IMG/M
Scaffold IDGa0070714_100000339 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35168
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006237Metagenome / Metatranscriptome378Y
F070413Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0070714_10000033912F070413GAGGMSTRLCLLWAYRCLLQLYPPAFRKRFAVEMLEFAEAAEPGEWPLIFGDTSVAIVRCWLQPARTSSTVVPAGQDAYLALGESGLTASRLLLGLVLSTAILVGLCYAGSLGYSELPQCHSIATENVSR*
Ga0070714_1000003394F006237AGGAMARRPDFGVEKIWSREELKEIGGNLARMGMEGVREFYERAYRECRMTSRDFPPARAVQELVQAWKQLRRWRRR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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