Scaffold Ga0070714_100005805

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070714_100005805

Scaffold Ga0070714_100005805

Overview

Basic Information
Taxon OID	3300005435 Open in IMG/M
Scaffold ID	Ga0070714_100005805 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9463
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046559	Metagenome / Metatranscriptome	151	Y
F092637	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070714_10000580510	F046559	N/A	PMPMKAAIAYNLPGLPATFFLNSRHVIVKRVYGPVTQAELATGARLMAGKTG*
Ga0070714_1000058053	F092637	GGA	VLLIVTICAGAGVLVFTGAMAWLGVKALGTEADRAAANQMLHSTAVLLGGRFRDRRDYPWYRRPAQYGAIEGELCGLGYVLFLMPWNAEDCGGAAMLHIRPRPDSPPAGHGPGWTVFTPEGVWHWPDRADPASLAGYVRQAAAAAASGDPLPDGS*

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