NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070710_10025509

Scaffold Ga0070710_10025509


Overview

Basic Information
Taxon OID3300005437 Open in IMG/M
Scaffold IDGa0070710_10025509 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3131
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000427Metagenome / Metatranscriptome1151Y
F019011Metagenome / Metatranscriptome232N

Sequences

Protein IDFamilyRBSSequence
Ga0070710_100255092F019011N/AMLACPLSAYADTVTIGYFDPAAGMPGIQILSSVSGPVTPNSPINQILDNPLLVGSGFGFDQIIAMVIPPTGNVYSGSLGGPNPTFEFAFNDGFVPIQGGTIYLYATWEGTLTGNPFTFPTVWGTSEMPSVKNGYTVTSQVLVCNTPNPFCGPFVGGGTVIGQDVFSDTIRTDSVTLTGVLPSPSFKITEMFAFSGNAGPPQGDVGAFIETTLFDAPPVPAPIVGAGLPGLILAGGGLLGWWRRRQKVR*
Ga0070710_100255093F000427N/AMTMTNVSSSTRGRRVKFTPQVIENIKEFVAQGVNRDEIAYRLGVTVGSLQVTCSRLGISLRRILPNGSGRHTADVRASTIPTPCSAGIAPVREQQAAGAAPSANFAITMRHRGKEKTTDIPLPSSAVDMLALEAMSRDFDIAALVGQVLVAAINKDMIEKILR*
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