NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070701_10383326

Scaffold Ga0070701_10383326


Overview

Basic Information
Taxon OID3300005438 Open in IMG/M
Scaffold IDGa0070701_10383326 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011828Metagenome / Metatranscriptome286Y
F102331Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0070701_103833261F102331N/APRSRVGIFRSERTRSTPLHSKLMFWCVLYYLDAFGPFGCLTKLNAKRAELVQKFVPRSRVLSFRIKHTRLSPLGPKLIFWCVSYYLGTFGTVWLPYKTRCKTGRSGAKVRAMKSCQNFSQRTYPSTPLNPKLMFHSVLYYFCAIGTVRLRYKTQCKTG*
Ga0070701_103833262F011828N/AVQLAPFGCVTKLSAKRANLMKKFVPRSRVGIFRNERNRSTPLDSKLMFLCVLYYLDAFGTIWLPYKTRCKTGRSGAKVRAMKSCQNFSQRTYPSTLLNPKLMFDIVSYYFCAFGTVRLRYKTQCQTGQIDAKVRATKSRRNFSQRTHPIHPIG
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