NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070711_100047150

Scaffold Ga0070711_100047150


Overview

Basic Information
Taxon OID3300005439 Open in IMG/M
Scaffold IDGa0070711_100047150 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2940
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023677Metagenome / Metatranscriptome209Y
F051558Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0070711_1000471503F023677GAGMPEFDPKLDLRVSGNDITIALLGTRYSVTYFKRRGSPGLFAKDILHEDDPRIPMTSAEFLAKAWKVANDKARELGWIV*
Ga0070711_1000471507F051558AGGMPKKADIKASLRGIARALHNFMGTGSEERLPEKLVTLSERLTKSSHQDDPRIEPAIGRVQMSQKLAKSAAELESMIMAELREHPECDSAAVEVTSKEIGWDAILVRAGTQLNDPCEAMLVEITERLRREFDLSE*
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