NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070700_100260296

Scaffold Ga0070700_100260296


Overview

Basic Information
Taxon OID3300005441 Open in IMG/M
Scaffold IDGa0070700_100260296 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium RBG_16_53_22(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049746Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0070700_1002602962F049746N/AYRLLGRFDAALGSTADSPVEAYRMLSWLAGAVFAVTLWFLAATDRWSSRSVRYVALALMAPATLMYFGYLEVGYLSLAAAAFPFIARDLIKGDDMTPGLLFGAILYGLGAAMHGIGYLSIAALFFAVIATGLPLRRRVVLAVALSGVAIAAALIWVWYYLAVLGFDVIPSHAAGGFIMRSLWRPREAEGRILYPLFSIITARDIFFSGLIAGLPLVLVALSVRNQSPREARLALAFSIPCAIAFLLFWPPQGIAIEMDMIVALFPAVFALLWVSSASIRASIASGALLVLGHTVFWWVVQDDRFINLMLR*
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