NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066689_10089034

Scaffold Ga0066689_10089034


Overview

Basic Information
Taxon OID3300005447 Open in IMG/M
Scaffold IDGa0066689_10089034 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1748
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007745Metagenome345Y
F018154Metagenome236N
F029070Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0066689_100890341F007745GAGVDYKLNLQEVIKGMKKVGPSGLQLLVQEMIRSRWIKDRRATYPYEVAWVFDQKEEAISRILKKLEEEGNIEPAGLGRSKKGPVKPYKPRTLRLPKQTIKKPSKPPKKDV*
Ga0066689_100890342F018154N/AMVVEAEIVKLRKFQEFLRTEDKLVFQDLLNQCKLYAPYASTMVSTIKEVPLLFSMLFGQHKKIIELEKKILMLETLATKTETTFSARTVQGPVEKVEANIVQRTDSLAKVFPFSYAHSTNRELLPF*
Ga0066689_100890343F029070N/AVKAKVSNKMKFMQMLDSQTYRVLQKEAKIRGASIQELLRTVIIPDWLSEHRRKERP*
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