Scaffold Ga0068706

Basic Information
Taxon OID	3300005452 Open in IMG/M
Scaffold ID	Ga0068706_1000492 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005452 Open in IMG/M

Scaffold ID

Ga0068706_1000492 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19218
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (72.41%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

19218

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (72.41%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008994	Metagenome / Metatranscriptome	324	N
F036129	Metagenome / Metatranscriptome	170	N
F039500	Metagenome / Metatranscriptome	163	N
F040512	Metagenome / Metatranscriptome	161	N
F044245	Metagenome / Metatranscriptome	154	N
F044342	Metagenome / Metatranscriptome	154	N
F049463	Metagenome / Metatranscriptome	146	N
F054491	Metagenome / Metatranscriptome	139	N
F057955	Metagenome / Metatranscriptome	135	N
F070747	Metagenome / Metatranscriptome	122	Y
F104638	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068706_100049213	F044245	AGGAG	MIDTMLSIPFRYPLLKKMNRTDAMVMSAILFAFRLHQQTGRYFYLSDAKIMDWTGFKRTAIYEARKRLEAEGWLVVKRGHGGHNMYMITDAVIARLEEADGQSREQQQDKLRKAAEKAISNLNVEQAIANIILTFILRTGRMPTKKALRRWIVAARKIKEHGHSADTIADFVRKEDRSLFALLKRIEKGLVKKKTRIEYEFINDPERGWIAIPHEVEVVEDALEVINERF*
Ga0068706_100049216	F104638	N/A	MNDKKDMILAALLTLDQLAVQFAVLDEIYPDFRALSKAFISYRDDLMRRADVSENDFEAYKRMVLNEIGDAVE*
Ga0068706_100049217	F039500	AGGAG	MEIIESVQTGIERIDETVRDLAELAVAIQRTERMERNAVTLRLLLIARAIEVHKYDVTFKLLTETLSYSDFYAVQLMKLAQEVGEQALMNAVTSGKPLTLAQWQALAEVGQESRNEVIDHVIEDDLPPVEITARATGLDTEEVIITKLLKRLNHLLVQIEKMNARERAVDVLAEHGYVTKIIRNR*
Ga0068706_10004922	F036129	GAG	MTRIKLDSVIEALSNQARREQDLSLIERDDAYLNHVINWIMLSGAVQSVQLLKQKRAVLKLDEAVVKELGFDVNS*
Ga0068706_100049221	F054491	GGAG	MSELKPGVTYKWVAERSEWCTGCGCNNYATGQCIRLDNSRIVLGLKERIEVVGGTPHRFSTAMLSYCKSEQAAQEAIQKGLARPVTQADFRRLLMLAY*
Ga0068706_100049223	F070747	GAG	MTKQEDNVSELDLLRAQTTLLNARVTLFDQKRKEALEKLVNQFCDFYCIPKSRRFDVMRTEEEYRGAICAVLFAVNELNKRGIAVKRVYWDRYGGLLIKLADPKLNEVKIDEEIKQLAKKRRKQNQGWFIV*
Ga0068706_10004924	F008994	GAGG	MRVTRFAVDDNGRALFPDYFIVDDNEGIALGMYSANINVQSIIDEGLALTPWLSTQWPGRAVSFNTWREAFARNGHAFPKYHAQIAKNVRLSELVDINRAFVELFMNGMDLTDPLNAETHRQLLTERNIDFFEFMNQK*
Ga0068706_10004925	F057955	N/A	MIDLIEFFSTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDISRLIDKAERTIEELEKAKGGRKDV*
Ga0068706_10004926	F040512	GGAG	MFDLLANATVAGLSVISARALEQYNWFQRLEPETKRLIAVAIAAFIALAIHMIGAIYQNAEPQSVKAAFSTALAIVIQQTYHALTKQDAQ*
Ga0068706_10004928	F049463	GGAG	MKKDFGNEYQKSSKTLTQPQMQELLADMLKVPVYILGKTPNLDDLNAFLAQFGYQTNLALLRPVKVWANLEEDIINEADKVIAQFIKSDLESPVIVVILPPLVALAAALVVRMKEKCPTLKVLVVHYRVEHEPHFLGFELFCT*
Ga0068706_10004929	F044342	AGGAG	MNDPVIPVTMHLPKSVVERFKRKAVELIPEEREEAPSLLLTLFINYMSSDDYWCLFLPDLTREDYKKWQEMANQVYDSIYETVKYHGAGMFPGEIADLAQAVVAARRMTPDDLIKLIIISARYNQVMWKRNDLNKDSPAPSQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068706_1000492

Overview

Ecosystem & Geography

Associated Families

Sequences