Scaffold Ga0068706

Basic Information
Taxon OID	3300005452 Open in IMG/M
Scaffold ID	Ga0068706_1008403 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005452 Open in IMG/M

Scaffold ID

Ga0068706_1008403 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2842
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2842

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004170	Metagenome / Metatranscriptome	450	Y
F009196	Metagenome / Metatranscriptome	321	Y
F017835	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068706_10084032	F017835	GGAGG	MSDPSFFVSPLVRQAARNLHRLEVLTANPLWTDLFCRANFWRTRQMMAMTPDEATAWLPALAFAVSCEKDADVLPELAWQPLPEPLPPEALPWRDILIRNWEQRPVPTEEE*
Ga0068706_10084033	F004170	GGAG	MNDPHDMGNRPVAPSVSPLVRQAAWNLHRLELLLMAGTFAWTNSVYHQYFWRTQRMMAVTPEEAAAWLPAVAVTVQRETWIPVLEELTYWPLPEPLPPEARPWRDALIQSWEQHPAATDWHKSIRLAALVRLDRRAERLPEWLAETRQSLDLEWYHRYFRLAGLAGWRPRPGDRPPHTGSTEVAHGTNSTGAAPAWIRFWEELYRSPDLNSLMATVALLHLAEGGWLPSGPSPERLREEFLRQMRQQYTSSSDRLVLRILLSSVPAGSPTSEREGKNVMDWLELTRWNTRWEKREAVWEMLAAWQREGVLERCGGSLAPDLARALEWERNSDVLIAMAGYVPGLAEVRAHPEAMRAIIARWEALSRNDNCRTCQAAWAARWNFLRAGVLTAEEQGRFGADYVNAVKFEPAVTALLTLAQITPPGMFPLATWAGRLSDQNDRRRLAAHLAIHGWLVDMAGGGQRRQVRQVLRQAGQEGMDAGTVAPFVNLPPEVWTDFRRLHEIETALAAGQMPLPDTGMENRPAPRTVLARLPEAHPRTGPPGITGRTTGRTAGSESTTRHPFPEVIRHE*
Ga0068706_10084034	F009196	N/A	RNNECRLAARLAIHGWLVEVAGGGQRRQVRQVLRRAGQKVTGTVAPFVNIPREVLPDFQRLHEIETALAVGQIPPPPDAGKGKRKRMGHLATLARLPETHPRTGPPGITGRTAGSESTTRHPFPEPVRHE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068706_1008403

Overview

Ecosystem & Geography

Associated Families

Sequences