NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068706_1015390

Scaffold Ga0068706_1015390


Overview

Basic Information
Taxon OID3300005452 Open in IMG/M
Scaffold IDGa0068706_1015390 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1835
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F019420Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0068706_10153901F006252GAGMKSFDEQAAYGLPYERLIAQTAALLLYPHRLDLALVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDAYPTTIIPQSVVDAARRLTIPVFAAILFTDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEV
Ga0068706_10153902F019420AGGGGGMATYRDVTFWSGATDGDREAAVIRARLLGMVIELGDDDERPDKMTAFYAADGGGIIVYEVECWEADGRMTARWQRVASLEDVRRRYAAYLERLEL*
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