NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068706_1036041

Scaffold Ga0068706_1036041


Overview

Basic Information
Taxon OID3300005452 Open in IMG/M
Scaffold IDGa0068706_1036041 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)970
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F053114Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0068706_10360411F000642GGTGGMQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGVVL
Ga0068706_10360412F001381GAGMQYVIATLYVLLWFSLAALATLVLPLWALPAALVHLAVAYVMLRAVWLAAVGGDDGA*
Ga0068706_10360413F053114N/AWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.