Scaffold Ga0068705

Basic Information
Taxon OID	3300005453 Open in IMG/M
Scaffold ID	Ga0068705_10003747 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005453 Open in IMG/M

Scaffold ID

Ga0068705_10003747 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7444
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

7444

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007753	Metagenome / Metatranscriptome	345	Y
F009447	Metagenome / Metatranscriptome	317	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0068705_100037471	F007753	N/A	VTSEKLEFDKPGALTRYFAKRWLEKPSAQGEQLIAWLLEAALGKNALYFIEKTKEYVDAWKGSGEVVPVDAFDGFVITGDPVEDSLIPHAVLVWTCMNDRPWREEVYHRWLDRLLAAGSAEAAYLAASLWPAHDLMAKVTYRPVRWLVYRGQLDAEAE
Ga0068705_100037472	F009447	N/A	VGTRATSDELGLDTAHRPGALTRYFAKRWLEEPSAKGEQIIAWLLEAALGKNALYFIEKTKEYVDAWKGSGEVIPVDAFNGFAITGDPFEDTLIPHAVLVWTCMNNGPWPEEVYHDWLDKLLVAGSAEAAYLAASLWPAHDLMAKVAYRPPGWLVYRGQLDAEAERLILIEMLKGHDGPRTSLYGSFEYDDVPYPSNFPKQYIERHGFTHPICGLVRPIELELYHGLEKRIQEALAAPSWSEGVKEAAMLLYLSLNALNDLSANTQEILSILEQNLFKLDENHINIINFHIDKIEKIDYNLIKDYINYLIVLYDKIIYNKILSIKIFYKYASIGLKTKDILYIGKSLNDIIFRLTLKEKEKVELWLKKQEDDFRIKDIFLSTYINNIINSIIIDKEPEIEQVYKKIEDIYGKIKYFDKIRLVIDQVIMYFGLGNSSYKICDFIDYILKKEAIINFNHNFQKDYAKIINSWHPNRKYFSEEYMFLNSNHIGLYLYYRILNKWIGIDFRDNIKEEKALKLNSDIINKIIENLYIQEMDSIEIKLNFYLNKIENNNLPYKKIKYELIMELINMIENNYDKISECLKDENKLIKFRKVILSNIEFIRGKLINSRTIELLRLYNKSKNIIIY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068705_10003747

Overview

Ecosystem & Geography

Associated Families

Sequences