NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068705_10037029

Scaffold Ga0068705_10037029


Overview

Basic Information
Taxon OID3300005453 Open in IMG/M
Scaffold IDGa0068705_10037029 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1687
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042114Metagenome / Metatranscriptome158Y
F043791Metagenome / Metatranscriptome155N
F052993Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0068705_100370291F052993AGGMSSLHQFKARAFQRIARKFNLRCYAFSYRDNQWLVAIRGNIVILSPTLISIAPDIIDIRKLGNEKDYELFLALTGLGVKQSLRYQLVATGNFVTLYPKYNHAIFARSNQHVYSTRWRRIALAHAQCLSRRIKQPPCMQIAEDVERGKLMVALNYVRLGSFYIFVNGIPIDYAYPFHEQCSPQVYFGERKMLMKDNVVPWLGRLERTQLLPLPTPPPTLEQVLDKSADFDYHDDHEQEEAYPGTD*
Ga0068705_100370292F043791AGGAGMIENVLIAGLATVYFAFVFTAKRGPFDFFAKIRAATRRIPVIGYHLSCPTCLSLSSGALLFALTFTPLAFLVYIMAVAGIVLALHGMAGYWHSKDDE*
Ga0068705_100370293F042114N/AMDEITRVETLNEAFKAAQRRVPFLYQHSSWLALYQPLDSQRARLFIINPHHYPQPNEYANATTEMAIFVAHAQPKRFEHNGWKCLQFDLERKTLQ*
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