NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070663_100045584

Scaffold Ga0070663_100045584


Overview

Basic Information
Taxon OID3300005455 Open in IMG/M
Scaffold IDGa0070663_100045584 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3098
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098280Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0070663_1000455845F098280N/AMKQLFTFLFIFSAFTINAQPKLSLHKSSSSIKPVIEKVARDYYQNFNNIKGDTVNENGTTIEFTSKISPDGALETSITKYVDPYSYTWQTTMFESEDYNAAAAKYKEYFRQLNNCTLTFYDKTSYKLVGNYDIPDEDRAFASSILQLNATNHDLELFKVEVALNYSMPSWTVKVMIYEKIADDKIRPTTLN*

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