NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070663_100393358

Scaffold Ga0070663_100393358


Overview

Basic Information
Taxon OID3300005455 Open in IMG/M
Scaffold IDGa0070663_100393358 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1131
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033545Metagenome177N
F034605Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0070663_1003933581F033545N/AKRVITRKNAGCGRDLLVTLFDQLFENEGTGAEAGFNLRHGMLSISLPDEKVDCALQQRQERNQEKEQPASETAESEFQR*
Ga0070663_1003933583F034605N/AYAVPPRPDIAPFSIEREDEDEFGQPLRTAYKLLGRTNAVSFSVAYQLMKYASVQLGYEYAITTHDPLQYENHLVQANVAFAY*

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