NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070678_100294045

Scaffold Ga0070678_100294045


Overview

Basic Information
Taxon OID3300005456 Open in IMG/M
Scaffold IDGa0070678_100294045 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009777Metagenome / Metatranscriptome313Y
F047540Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0070678_1002940451F009777N/AQQQDRDLSGIHGIPVEGHDIVAGVEIVGTKQLDVSRSGWDERHQRLRANGADLKLGWPLESQTLCRFKEVLRDEMREKGFLDVEITHDTRPTFGNRRDLTLEITIVEGKRTRRAAQTGRLLSPAERCMR*
Ga0070678_1002940452F047540AGGAGGMSTSADAPSRGSARDRMATRIFVAAFILVGLVAPFAFEAAVMPGYVYFVGPPLDLDAPRNGQVVVHIDVLGKQPPDIARIRVTDIATGAIVWDVKPTTPTSECWNRCWNLTLSAGSNPASFTAGHQQFNASIPQKSSFSLTRGTAYLLVVWDSKGRVAHERFTL*
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