NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070681_10095544

Scaffold Ga0070681_10095544


Overview

Basic Information
Taxon OID3300005458 Open in IMG/M
Scaffold IDGa0070681_10095544 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2921
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008060Metagenome / Metatranscriptome340Y
F052754Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0070681_100955441F052754AGGAGMRFIFLAITFLWGLLLFAKETPKAMLVVHNDIKGPIIGNMHTEDFAIFADGRVRYSESGNDRKTATVNIRLTPAQLHRLTALLNSKEMRAVPAEIPSQIKVVDFDWEAQLKIQHASGRQSIAIKNFYPMMNTQRPTYPQALIEIECFLRDVQARATKRPVHTEDEDWCPEKTQ*
Ga0070681_100955442F008060GAGGMAIPDVTQKSFIYHTLSELNTAFAAIVAHCETLQQTGLFKSKAAKLFSSFTQELQAEMNQEFLEDLHQLELDDWNRYGKAREKWEKHLRDPDDVFIHAEERRKELAKQRKKH*
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