NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068867_100139678

Scaffold Ga0068867_100139678


Overview

Basic Information
Taxon OID3300005459 Open in IMG/M
Scaffold IDGa0068867_100139678 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1892
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030775Metagenome184N
F047130Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0068867_1001396781F047130GGAGLKTAANKIADKVNAQGETSEARLDAMDGRIDQAVIQGVHLGASLGLAAMTSQTNEDYSSQPVGFVGGRPDEVDDIDERLEAYDDHAAALAEITNPQSVLNKLFEE*
Ga0068867_1001396784F030775N/ASLVQDADQIKDLLELIDQDIPSALKAPLESAAHLDDHFAMVRRATKNISSRAALQKDRSLKKLEIKDLHSHIQTTRNSLATLEPELRSMEDEKIRLEAQLAELNAKIQSHRAHIANLPKNIEATSLKIASTIKEDQQIKNKLSSIQSSEDEDQKVLDNVSRIRTEAIEAINHLLNQ*
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