Scaffold Ga0070706_100005819

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070706_100005819

Scaffold Ga0070706_100005819

Overview

Basic Information
Taxon OID	3300005467 Open in IMG/M
Scaffold ID	Ga0070706_100005819 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11713
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002349	Metagenome / Metatranscriptome	568	Y
F048525	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1000058196	F002349	AGGAGG	MIVCCANQCAFCRSSIVSGQRWVREKIPDSALDGRDPSYHRYHAEPFAGQEGSCWEKHQMEREIGRTTAYAA*
Ga0070706_1000058197	F048525	AGG	MRKHYLRFLIALIGVTGLGTAAKGQAVDQIVVNIIPYEFVVAGKTLPARTYRVNRLSSIHPEVLILSHFESRAGLMVRSTEVESTRAYKREVSFEQIDGQHFLSKIETADHVFTIPVSRSEILEAAAKSARGTSASGK*

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