Scaffold Ga0070706_100020552

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070706_100020552

Scaffold Ga0070706_100020552

Overview

Basic Information
Taxon OID	3300005467 Open in IMG/M
Scaffold ID	Ga0070706_100020552 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6084
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029192	Metagenome / Metatranscriptome	189	Y
F043106	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1000205521	F043106	N/A	KDLMAGHGLTTGFETPKELQEFNAAWATLGALAEEIWPLPSRTFEFRLSGSDAATMVRSSDDVIEFERRTGLPVRYGPDFMDWVRDECKREGTPLKQLNTSLHEACHLAAGEIAGFPHTEITGPTFACTLEKVAGVLKITHVRYERAAVVHDPDSAKWFYTEKPIDYAAMLLAPLCVMPRLMPSTTEDSHFVPDIIALMRHVPGQEDTAGLEAAAALTDRPEFLERVKLCARTLRPLIRKGGITQLPRTIGGDQARSASVGSMDSNR*
Ga0070706_1000205528	F029192	N/A	TDPGCALEETCFYLTHKGMPKAEEIATALLQLMNNPALFESWAAQSGAFKADGQAFRPTQ

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