NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100000019

Scaffold Ga0070707_100000019


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100000019 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)132161
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (71.05%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000186Metagenome1702Y
F002368Metagenome / Metatranscriptome566Y
F005385Metagenome / Metatranscriptome402Y
F005698Metagenome / Metatranscriptome392Y
F006213Metagenome / Metatranscriptome378N
F007968Metagenome / Metatranscriptome341N
F008355Metagenome / Metatranscriptome334Y
F009392Metagenome / Metatranscriptome318Y
F013177Metagenome273N
F013287Metagenome / Metatranscriptome272N
F015715Metagenome252N
F031048Metagenome183Y
F040029Metagenome / Metatranscriptome162Y
F045649Metagenome152N
F069926Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0070707_100000019100F000186N/AMSSQRSDWRERLHANPSRMEQELAIKLQEDGIRYQTQVEIPVTTADFYFPMQSRPLLVFVDGRVHLGKTQMIKDEELRSLLRKRGYRILEVFYDGYSDKKRDQLYKEIRNCLLTSSS*
Ga0070707_100000019106F008355AGGAGGLKSLRWTAVGLLLLTGIIDFYYGNSNAGFYENLWYVTGGIYIFAAIIIAANIEPHFSQLTVFAYSLFLLSVWATVALETGTGLDAVAYADKAVEAILAVNMVLLFRSSRISINP*
Ga0070707_100000019123F005698AGAAGGVKLFGIAGFLLALVGGALIGYSALTAGGLSPFSLFLRLFEALLALGAIIAGVIIYTGPMRFGGILAVIGGIILLLLTSFATPAILVFVAGVIGLIGAAIKPPWWKFWKR*
Ga0070707_100000019132F015715AGGAMDKQATIRTIRASYKIDQVENGWTVSTSDGNMFVFADSRELAEWFCMVVGVPLDEKKPKEDPLELEIRKLVKSYNLVAEDIDKHFVAGHVRQ*
Ga0070707_10000001914F009392GAGGLELEYVRLAPGFAREVLEVYENWEGKNKVPIKLRELMMVIEIEVNKLYERGSWDPAATMPKPPTLKDTKLG*
Ga0070707_100000019143F045649AGGAGGLTGSRIILRLALGVLCGVVLVLLPAVFSAGPTAVPSTSSTQNFGRASQPATLAPAAPSFFGFNSATLGGLSLLTIILFIFLPSTIFSILVRRWAEKKAHEYLE*
Ga0070707_100000019144F013177GAGLSTDHQPPRIFFNILGGSLTLLSVQLPWMTINGTYPISVEFGGIFAVMFYWALAGAILSFLSRFGGAMTLVGLIGFMGEPYISYRLANPGLGLLLALTGAIMTFAGVRWSIPSGMVRGHEIVGGVLYSVGFLIILTVVVSSFVYGGLFSTGSGQLIVAAPLLLIGVFMTGLGLKLFLTPERRQGLSAF*
Ga0070707_100000019147F005385GAGMESRKRRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWVDSSYKFEGKPVILVYNASR*
Ga0070707_100000019148F007968GAGGMRYILTVDFEDDIDIESFMHFVAYHSKRLKCASKDVFIRLAHEWEKQLVNPHESTNPNGVKKEKKKTLKETNE*
Ga0070707_100000019149F006213GGAGMRGMPHTVKVERHQNELVVHVALLHGPDAKLPGGVLLHTEGWVDIGYGLKMYLVIGSGNITYHPKQIEEKKSLLQRLFSKKQQPLLEDKGTAS*
Ga0070707_10000001925F013287GGAGMGLSVKPVTIRDETYLKVPKDVGELLRVMASKICSVNFRIDEKECTLIYSFAKSVPDLREEPSDPRLVLAD*
Ga0070707_10000001959F069926GAGMIGITVLAIVLSSLSLTYWLDPGRVIWTKDGTVTAVHQYSDPNGGTNWNVLVYIYQQNDMGYLVNTGYVPLNGLGTQGHGNYCWDDGTSNCLNAPLSFRLNETLSVAALNNGNFMLKNRQL*
Ga0070707_10000001961F031048GAGMEALKHTLDLKPKKQVRQVLLLVSTSIIIITSLLAYNRITYEFPLAVGNTGQSALGPPTSAGVGILYAMIVVAAILGFVTVLSIFGSLRNVSDRISEIVVGEPSPKDSVLRSQEKDEWEDSSTKKEHRATDDEILRALLLSKDKKKATTE*
Ga0070707_10000001962F040029AGCAGGVALAPEFFVLLGVSIFLAASIVSALLDHYLPSILQYLFQGAAGAGLGELLLGQGLNGPTRVWAGIVYLSFALSSLVGMNIRLAIVRRRMNIASIFSQMLTVPVVMISALLLSSFLENGGELVFSTASILTIGTAVLVANLSIFGLLREYSRQGTVGSGGLVSLPNSPLPTLTGNVSPGFAPHPLSGQEEDWEEAPTTKED*
Ga0070707_10000001963F002368N/AMVIQLTPTKIKGSKYLLIPKDLAQLLEIDDKSILNLTIEETDQGQRLIYSIRDKSSSPVQG*
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