Scaffold Ga0070707

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100000028 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070707_100000028 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	123368
Total Scaffold Genes	127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	89 (70.08%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

123368

Total Scaffold Genes

127 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

89 (70.08%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002922	Metagenome / Metatranscriptome	520	Y
F003600	Metagenome / Metatranscriptome	477	Y
F005527	Metagenome / Metatranscriptome	397	Y
F008610	Metagenome / Metatranscriptome	330	Y
F011478	Metagenome / Metatranscriptome	290	Y
F021739	Metagenome / Metatranscriptome	217	Y
F028750	Metagenome	190	Y
F065455	Metagenome	127	Y
F072184	Metagenome / Metatranscriptome	121	Y
F102600	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_100000028105	F021739	N/A	VAAVRRTVERIIESDPTIRTGLQRGIINSRALSRYILENCAVDSTPDAVLGILRRYPLDGTSGTSAGLALKDCHISMRGGMAYLTVENAPDIMKKVAEFASTIRSMRGENFRVIVGSDSVRVIAGQEALDNFKQSFRAKEIISYSSELAEICLLLPFGTERLGEIATAVISQLTLNRISLAGILVCPPEDIIIVPQIEAARTFEALQQLLREEDQNHPPKLPRMKKGLSKPEKLLEILRLDESLMNPILAA*
Ga0070707_100000028126	F002922	GAGG	MTTVVLQIDEVIGLLANAGFLWALLLGTWGALSYSFMRHRKHGPKVGPSQTAGAVNFSLTKPRLSEEEIFRILTTTETNIQIVRICESPKTAREISKGLGDIYPGHKEKGFPAEKLGEHLANLERLGAVKFNGEKWAASDIGVKMVRKYFG*
Ga0070707_10000002834	F102600	AGAAGG	MSDGMVDRFGFLRRLDVLVLFGALLALFIALGNEPWWTLTGTTTSNLLSVQVSPFYLHINAVGLPQTMALANNLGSFTRVLLIFGSLALLAASLSPTAWWRNLAVYVGLASLSELYFSFVMIYYWAESAIVQAYGVVPPYYGTSFLPARILGLDLQYYSSPLVTATFNFPYYLGFLGMSLVVGRSVMKIIQDRAFQVLGALLPGGHIHDIYLTPPYQHIWFSSNDKEFNPLGKDPKMLNDDELLVSFKKLYDTVEPGGSLSIILPDWATSLGDRFQKLMPVTGFEVESSGIVYRVPGRPENELRFRRPVEEQTTAVDAKPSLEDVASAPNPLSSASPGEELVDSNKPPVIEIVQSPNWSNVRMTRPERAMLKTAVAIIIARGEPVPYRELLNQVYMELVEKKIDFDSARQIETSLRKHNGREILLLEETDEAGARVSQKWWVGDQKLPLDREHKIPIVGKITEHRPRLPKPRGLLTRFQRRRYRPQSSGDDESYSEQPRS*
Ga0070707_10000002840	F003600	AGGCGG	MLRRARLAALGESFVILTLLVWLSLEYQNNFYMQEWVQAHFWPAQWLLNGTLVGIATGLLAGWMLATWQGKRSREQKILDDLRKIV*
Ga0070707_10000002864	F028750	N/A	MLAIPKLRLNPDPERVNLLINRSSPIILTTLASLVIFHGYLLIQDSNGGSDLISADIPKSLILLNGQNPYSSQPWASPYPPLLLLTVSALIRLSGLFAVQTSLDLISQQLRLLGLFADTAVALIIYLAIRARTSDPLHALIPACLFLALPAISTSPLYFFHSDTFGYPIIAASALTLTRRHYFTETTLLSTATIFKIHPILALPLVLIWLARTQGVRKTLPTLAATATITTLGLILPFIIPGYQQSLLGFNLANQGNGTTIAAISLVNSILPTSLRFTLTELFINQAWITTAVTLYVIILGVVWTKAKNLSPIDVVLLGLIAWLIPLKIVYAHYIIWAIIPFLMRGQLKQTLVIVGLLQLADTLAYWSSSPDSSPIPEVAETYGPLLASLVIRIIGITALVFVLKSLRSTPIDPLSAASHPTRIILSTDPS*
Ga0070707_10000002869	F008610	GGAG	LADKPSKVWEPYSKMVKMQEEDWAVLESVYNDYRYRQGDLQRSEFIKRFVAKGVTSYLYQLKSRTPDALVRIAQAASSMGSQAYR*
Ga0070707_10000002872	F072184	N/A	VLTYFFGRLGLAFSIGILSHLLGDSIVGTIPLLYPILPNWDVGLNLGIPSLADTILEVGAFALVLIYSYWNSDYKLVLKPSRDSLLLAIPLFALVTLTLLFAGDRSIPLTEFAFSRRALTVITLGHILLSGILALGVFQGFRWYLGNRKRRQKTRTATSTQPVG*
Ga0070707_10000002873	F005527	AGGA	MYENYQNDFYFQAYVNSSLQGSGFTVVALSSVGIFSAVAMGLYLKLRRTHQELEQLILTEHATTEEPGSKTILAPHVEQHLIEMIRKTSPGDTTGASSSIPILKREDT*
Ga0070707_10000002892	F011478	N/A	LQKRTLLLPLIWGIFGLGEVAGLTYLYGPIATSLPLPSNDKPIGGSYLPVLFFNFAALVAVIGLSLYSLGIWSIDFSSRKVRTDFVALGVMLASGILVFYYAIFLFPLVIALVYFLATNVD*
Ga0070707_10000002898	F065455	N/A	LITIPTRGEQTVQYTIIRLGRDYEGEIEDFSKARNKFLAEHEWVLFIDDDEEASQMLLSHLNSLSPKFPYYWVRRVNLQNGRYREAWNPDFAPRLVSNEVKFVGRVHERIIPKNPHGIIDFPILHNHVGPSTYKNYWYQNHPMYRVWMGIKKAMEVIRDR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070707_100000028

Overview

Ecosystem & Geography

Associated Families

Sequences