NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100000047

Scaffold Ga0070707_100000047


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100000047 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105077
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (65.49%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002500Metagenome / Metatranscriptome553Y
F005700Metagenome / Metatranscriptome392N
F007213Metagenome / Metatranscriptome355N
F007216Metagenome / Metatranscriptome355Y
F007915Metagenome / Metatranscriptome342Y
F009672Metagenome / Metatranscriptome314N
F023823Metagenome208N
F030030Metagenome / Metatranscriptome186Y
F036630Metagenome169Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y
F061700Metagenome / Metatranscriptome131Y
F073400Metagenome120Y
F075928Metagenome118N
F088676Metagenome / Metatranscriptome109Y
F088687Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0070707_100000047100F046962N/AMEEIASRGYPIETTSQPVSPDTLTDDQLKDLLAELISSSASLNVRVWLDGVYTDIENTGGRREWMKGREVYFKVEGKVDGKNGPEDPSPGRI*
Ga0070707_100000047105F005700AGGTGGLTYRTEYTLGFLALLPLLATGVAKGTGWLVTIIVVYVGVPLLIWSLLVDRLASFVLRIICRLRESSGHQYYFERQVGKPGISRRLLRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAIAMGGSLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAITMARLFPQVSAPSLPSPSAPTLRSAIVTEQTKQTTEPHS*
Ga0070707_100000047106F007915GAGMPNIMSLAEAAKPALPSSTIRSYAMIGIVLYAFGLVLNEIGNGLSQLWLVPYADTISALGFVIALYTATLAGLGTRLTVLIGLIYGIGIFYVSEPDSTYLASGFKIGSYTHDVGLGLIGFTMIFLIALAFYLTRAKAAHGSPSRQDPGSAS*
Ga0070707_10000004719F002500N/ALPITFDDIELSVIAALIGLAVTLPVTYLIVDRIIDNNEKKKLVPVEKLAKERLRSKLGVGFLTTFLITLVIDVTSASREKSPIPKDVLLLHIEKLKTAQSDLETLLGVYSNVLGVEISRMTTDVVLQIEHLQEDFEYLAETQPRPPTESHASHMEQVLLKTVHLTKGELIALGTDDTQIRALEDWLTQYTREGRPSPKKEQPIAVRGGHTI*
Ga0070707_10000004728F007213GAGMVATFQDTVGYCFRSTLETMGTSVRDVVYDHLRRKGIPESEIPIQFDDVVRVLDESFGGSARVIIYKTLVELYQQYSMRIDFTYQESLRDHMSLLRERVVVDHIIPKRARIEDSRLEGRLSLV*
Ga0070707_10000004738F036630AGGLATQRPAVTTGLILGVLAFQILVLVILVFFPHIPDPGLFNLNTDIYFLLSPLSTIFLLELLYAWLLRIAAKQATRYSSRARSIARFLSEPFQKILASVGARSLSESAKTFKILSRPRLLLIISIATSILLAFVPYRPDLNPAGTLVGVDSPIYVTWISQMLARPVPQALQYSFVGGLDGSRPLLLIILYIVASLGVSPTQIIEYLQMVLAPLLTLSTYAFVRFGQGNANFAALTALFTPFSFYLPVGLWGGYYANMAALVLAYLFLTLLLLFSKSPSAAKYVAMFALSVALFLTHPWTWALITTTGLVFALSLWRETHLTIHLKSIAGILITGVALDILKSTLFATRSVAADLATKLPTSGQVSTFWINLVDGLLYTHSGLLASWIILGVGLFACFALRFKDRFERLILLWVATASIPFLILDSYNQTRIVYDLPIPVLMATAILFFLPLIGNRKVRWPGIIILLILVTCANYALQGILLL*
Ga0070707_10000004742F075928N/AMSSGIDELIAALPRVSDEQLEAWFTMVVKTKTELVEAKRFLNGPLTRFHRSLLAQIREREERRNQIE*
Ga0070707_10000004743F088676AGGVIVTVLNDGPQDENVDGLVVRLILVGLLVVVFIVIGPATFGAHLNESPALPELLVPPLPEKVILRGFADQRAFGVPAEAKPTAA*
Ga0070707_10000004766F007216N/AVALVLPSIALWRLLKHKASITGVRAGNLVRLNIYFLSSILFDIFRNLGYSWAAFGSGVSSGLVFGVIGLTAASLYFCPECNTLREAWSKLKSRRSLLVYEGVVFAWVGLNLSLPVLFLPFTLVLLSVATVYPTSLFLSARRRARPPHVRNSMALLSVTWALFVTIGTLLFALGAQPPVLPVSVPYGWEIAYITGSVLFFLMSTADAFTLSAVRFSSGQLVPETIVKPGHRYLILHDSGKRAITFLSSTLKGLIDSGARVVINASNNGWLVGNLSLYESRFNEWKQNGRVVVSENVVGHSFPHEGLTDRLSYGPTSTVFVNELGQENLEGVVSPQDSGSSERHQEPAELFLLESSKAPRPQLTEFLRRNTGMELLNLSESTDPFSSLVDLDHQKIRGSIVLLEYETSSDYEGVVDKFLAEGISNAELCVLFTTKSSKLYRAIKGKRMIKIIAASSLISVPDELPDGEMQIPDKELGLVAAVLSDFIDNSKNSGASFVFDSITELIRGERWEQVYSGIKQLIDLLSVPNATTLFLANVNTLDPRFLGALHGAFALQLRLDDNGLRAIKVPTN*
Ga0070707_10000004776F009672AGGVSARLLDTSPRWLSLTLGCSAGVLIIAGIGFFFGQLALFDITPYTLLLHLVLSLAVSSSILNLRINIKPERKPLLAVGVAVVVGSIWSSVQQWIGYFQTGTVSDIILIAGATLMDIAGGCVIYSLFHLNVLKNKSSV*
Ga0070707_10000004783F073400GAGGMRSDQLKRFLNSDVVGQLTNGLFFEGHVQDRSGKARVFDQQGEVPRRISAIRVRWLAKAVRHC*
Ga0070707_10000004785F023823GGAGGMELADESKSAFDQALVDSTIAALDALGPTVKESIFLLLQRRNSITPDEIPKLVGEFVKALQEVLGPTSRVVEKLIIAGLIARRQVPANMAQGRSLLEVVGSIRLSQVSQS*
Ga0070707_10000004793F061700N/AMCDKCHRFFVINYEKNEKGEVVEVGHELDIRVKSSGVVRVEGDEQQEGSERNPPIRKYQEETCW*
Ga0070707_10000004797F088687GGAGMSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENDFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATIKSK*
Ga0070707_10000004798F030030GGAGMAKFIMSIGDNAYDILSNEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPAEQRSNLLQQSIYRRDSRDSQMLVSPVARLRH*
Ga0070707_10000004799F042845GGAGGMETRKWKAFLRMNGETAVDSGQDIMTEFRAMVEYLKWIGVDYSMVVQVESDQPERVQSLAFEQAPRRRETEQPGA*
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