NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100000120

Scaffold Ga0070707_100000120


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100000120 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73908
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (59.26%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F001047Metagenome / Metatranscriptome793Y
F001899Metagenome620Y
F003096Metagenome / Metatranscriptome507Y
F004341Metagenome442Y
F007215Metagenome / Metatranscriptome355Y
F011481Metagenome / Metatranscriptome290N
F030393Metagenome185N

Sequences

Protein IDFamilyRBSSequence
Ga0070707_10000012019F007215N/AMTVFVICLVAVAVLAWYQSLPKPNGGPATPTAHWTEYTLTKNGNHTQLQASYSDGQVTTEQVLWLNFDNRTAVYNYFGCNPSMPGCTLDGCAFTVLNDTASEYRVRVYCAPGA*
Ga0070707_10000012032F011481N/AMLSLRDENFNLLTNEAEDRGITVQELIRAVIIPDWVKINTLAKPNSSGNSEKIRPYQTVSGRQPIIQAMGRLRD*
Ga0070707_1000001204F001047N/AMRETMFDESYNIREVLDDVIERVTLREKLIQTAKGFAEKKKEERYTLAIRQFDNLMTDFLRLYQPILDRLRSYRESLSKELSTLKSSLATVNGMLEVSKGIEGLAAKVQRLESDGQELDETIKEKSKISDKIDDLFNRIRTHNPGMAGPGRDSFADVMSGMPKDLFPEEPTREAPAAKKTGTRS*
Ga0070707_10000012040F001899AGGVATSGRDESRLAMTCNFRFEVRPEDQIVELVAEHHTVHVCLDCLALLTVHRRIHHMKVEKVIVEMAERTPVLAEA*
Ga0070707_10000012044F000611N/AMNFPTYVFATVNPGRSTNVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIFQTVKEIRNISDIRTTDTHTGFDGITPSKKFENQMALGFSLLNCEHTTSEQVIKQLSSIPGFVEASTVPGQFDIVALWQAKTSEEIVQNSVERVSHLNGIFKSETILAYTPVFKA*
Ga0070707_10000012053F003096AGGCGGMTANAPTQRDEATDPLSMAGLVDSSLRPGGSISLTFSDGIVHVMLDQTGDWTITAGLSILSDRMMQLSRSLEELGFFQAAEQGGMVYHFWTSALKDHYSDRSTAEETLLRVVKSFQASSVPRYIG*
Ga0070707_10000012068F004341N/AMPKQLVLYMSKEDEDSFLQYLRSTGDLVILPSTSPTSEVAPVSALPEPSEDEATRRFWLQKTTVSLALVTEYAPEKNGYVIDGFQSPVVEFLRSWTVSNVLLAGGIRADMNYLDDATQDLVRKPAEFRGWFDAMQNWIRKNFKHLTLLTYVGPGAEEFSEKGGLFH*
Ga0070707_1000001209F030393GAGMGKIHKVEKFFDVLMSFASLVGFASTAYLVWIFLNTPPTIVVTTTNVGAPGIIGYPVQTYVIQGVPFFWIFTSLISLSAGHTYRSAKHLILTLAGKHYFPHAPHLMNTQPTPTPTAPRLRQTESSQ*
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