Scaffold Ga0070707

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100000165 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070707_100000165 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63617
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (76.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

63617

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (76.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009059	Metagenome / Metatranscriptome	323	Y
F014967	Metagenome / Metatranscriptome	258	N
F089795	Metagenome	108	Y
F104542	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000016518	F104542	N/A	MASSIGFASYLLRNGDETDPRRIWRLRRFVLRPPLPFLIFLVVVGIWTAAGVLLSPWSQDQIGSGGDTYYFFSYQIWYVALSALLLLSFVSLPVLSFYHQSKIVHDKKASVSMKIISVCWAFFGALSFFQIAAGGLFLPTSETIGLVADSFLFILIAFALREPTILGRIVTSGETVSQAVYSKVNTDTIVLYNTESDRRSLVETFVKDGLASGQDIVLQVTKGEVPFYRAVLKGSALTDSSLGEHSVTIQPLEGTVAPREINGSLPTSVPTERRELVDLDELDPDQCRDIISRISKPSNAPLAKRTGRIWALNVEGAHPRVLDLLQEANPTARVIDLAMQQDAFSSMINMEHEDILGNRLLLEYEPTSKYEEIAQKFAREFQANVESVAIFTSAGSPIFRKFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALAKKRIGIVFDVFTDIILSQGFEKAYGVLSSVVEMTESDTVSILVLINYEALEPRVLGAIQGLFRSQLRFNLESLKVVKLQGTRQEDNYKEEPLAGVQNSAGGIRA*
Ga0070707_10000016519	F014967	GAG	VTLKVRPVKLRDSLYLLIPVDIARLLGVASSSDFQLSLNENQNSVKLVYELKKEENQTVDEKRE*
Ga0070707_10000016532	F009059	N/A	MKHHHVPAIERALPMERIVAAFAERFDDPYLDPMAELSFEELTAAFPDMPKEELEEGLSHWTNHSGEKTLSTKTVETGGAETRVWFVHGLARHRIDPSSTSSGRVALG*
Ga0070707_10000016584	F089795	GAG	MCLVARGQNPNFSSHKFSKSLPVLAKPVVSKPTTPRPDGITFLGGIALLAGIVLLVAAITFTLPYPDGWDNGPGLFGVWIMLCFGYFGFGQFVPALLRPIGIPIIVILAILAMLYLAAGIGLLSGRRWAWTLSATLAFFGVASSILQAVTLSFYDFFGIPGLIVTLVILVYLASPLARNFFFKRPLSRPSVLLIADD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070707_100000165

Overview

Ecosystem & Geography

Associated Families

Sequences