Scaffold Ga0070707

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100000595 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070707_100000595 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36389
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (68.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36389

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (68.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F006617	Metagenome / Metatranscriptome	368	N
F008019	Metagenome	340	Y
F010240	Metagenome / Metatranscriptome	306	Y
F012566	Metagenome / Metatranscriptome	279	Y
F031444	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000059529	F010240	GGA	VSSQRLLITNFREHLGVYVLASASNAFLTVSQYLAVSAAVASYLPVDPDTSALIASYGRVPGIALALLLNSLAFEGILSVLVVALALTAIVKTGWRLAYTFSSVVISAFVGYWLGSKFLAILEWISTLQTNRVDISNSYSSLFWLGLGATICYVLKILILRKTYGKLGRDEH*
Ga0070707_10000059531	F006617	GGAG	MLLWYVWIRLVDGAWHRLDEISKQLRLPNNAIEWAAKFLCDKGMAERGFEENEIRLHQGNAKFEDAVRALSSPTKSSK*
Ga0070707_10000059532	F008019	GAGG	LGVRKKVAVSIVLIIVVALAVWQFTSPQLLPPVGNKYSTFGTYSNRGSWTFNETTRYVTAYLAVSISNMTFPRTGIGTDYSLVISDLNQTITNSIVKGFGVRVTGMNIQDNVDGSTSTWGNGNAVSDAVQATSIFFFKTSTNHMLRFTVTFQLYDLLPLGSIPDRSVTSSFNITQTVL*
Ga0070707_10000059535	F012566	N/A	LSPENAGRIFNPSNFSTSNNNDDNRLCREILESDPAIRVAAFIEGAEVTSYAEAARTKNAFSQSGDLRKQVGFWSSIVTQMARQTDQMFGNTEYVCFTHKALKMVSVPITSRRSLGLSLDRSADPEKIILKILAKFDFGQTV*
Ga0070707_10000059536	F031444	GGA	LDLKSDFASLFQTAVKDGLRNTLGETVMLTVVPLLKQTLQIYAEKPGEFHRELQFYFGFGALTLERMILKELFQKLNLHYPSNNELDFETSIGLARKDLALIERRSR*
Ga0070707_1000005954	F000186	N/A	MSSQRSFWCERLHANPSRMEQELVIKLQENGIHYQTQVEIPETTADFYFPLDPRPLLVSVDGRVHLGTAQVVKDEELRTLLRKRGYRLLELHYLSYSDKKRDKFYEEILATIGMRSPVC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070707_100000595

Overview

Ecosystem & Geography

Associated Families

Sequences