Scaffold Ga0070707

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100050850 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070707_100050850 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3973
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3973

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_1000508501	F000611	N/A	IIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREINDIRTTDTHTGFDGIQPSKKLESQMALGFSLLNVQHTPVENTIKQLSTIPGFIEATTVPGQFDIVALWQARTSEDIVKASFEKVTHLEGIFKSETLLAYSPYFKA*
Ga0070707_1000508502	F004048	N/A	LNRLRRLSGYQRIKTGPSPEDNALLQLTREVSAQFQIPYWYKQVVWGRLDRYNSTGWIRSTPTIRSDEIVTVPGSLPEAELMLPEFLKGRLSLDEWKILIALHLVRFKAYNRGRTRRLLGKIALAPRGLFFLLLFYIPAAASGGLSGPVLYFPSPIFLIAALWIRRSLRRSLQRREFALDRNVAEQLGIPQVLQVLEKILNLDQIRIPPNLRFPILAGWIAYWNPSVRERTGELSSPPPVDLPRSSRIPRIGIRGRVIFVLAGFAIFWGSGLVAGDIYARGQTSVVCTDTTCSALVVISTAGILMAIISGISIVVWIARRFL*
Ga0070707_1000508504	F002498	AGGA	MKAQTRSYNLGRGVESLSKEEHGLFFDAVQRLGLSNEVKLAAVALYLDFKSRPIGEYNSDHKNLEIFLIASISLAAKAVGDLRTDHEFESKMLVGKERLADAEERIIKSFGVQDSIIRFPELLLQLTRRQIESMAETFAERELVSGSEKEELVQRSYKYLDAAIEKGLAPKMSYRGRAAGMILKAVRDLELQISEMEIARAAGFDRRTMEANRNVIDALLKDSESSEKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070707_100050850

Overview

Ecosystem & Geography

Associated Families

Sequences