NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100098999

Scaffold Ga0070707_100098999


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100098999 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2825
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013177Metagenome273N
F045649Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0070707_1000989992F013177GAGLSVDNQTPRIFFNILGGSLTLLSVQLPWMTINGTYPISVESGGIFAVMFYWALAGAVLSFLSRFGGAMTFVGLIGFMGEPYISYRLANPGLGVLLAFAGAILTFAGVRWSIPSGLVRGREIVGGVLYSVGFLIILTLVISSLVYGGLSSTGSSQLIVTAPLLVVGVFMTGLGLKLFLQL*
Ga0070707_1000989993F045649GAGGMTSSRIILRLALGVFCGVALVLLPAVFSTGPASMPSTSSTQNLGRAAQPATFAPTSFFGLDSATIGGLSLLTIILFIFLPSTIFSILVRRWAERKAHDYLE*
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