Scaffold Ga0070707_100175526

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070707_100175526

Scaffold Ga0070707_100175526

Overview

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100175526 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2088
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001595	Metagenome / Metatranscriptome	666	Y
F003372	Metagenome / Metatranscriptome	491	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_1001755261	F003372	AGGA	MAITQGKMPFVFGVVVLATLLTAAPAAHAACRSPKNICKHFDDCLQRTADPNNKDADGIRAGVKARNGQIVLAGAEACARDLGRKQQWDKWARGCSELEFV
Ga0070707_1001755264	F001595	N/A	MMCARRVAADEKSSGRNATMSGWIKIGAEFITALAHQWKGSSHPNLPSETTNSMAAENLAPGVDSVAVRPESQISIKPEASPNKQEIERRREIVRHFFNDFWMSTDDKPRTFAERLNRAEGHINEQLAARGETWQLDATTRKQLGLPPPRTV*

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