NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0070698_100001188

Scaffold Ga0070698_100001188


Overview

Basic Information
Taxon OID3300005471 Open in IMG/M
Scaffold IDGa0070698_100001188 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28865
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003908Metagenome / Metatranscriptome462Y
F020435Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0070698_10000118811F020435GGGGGVIRLSELVSALTPSQFAQVALLLFFAVFVAVAIRHGGKRRAAEHTACAQLPLQDDAGDRR
Ga0070698_10000118823F003908AGGAMTFRLLAVLALCACSSGNKKRHLTPEQMITADPLPLAKGAKWTYTVTTKKFDPDTNKETTKTLEWTTEVLDEKAGNGVIAYRVKGWPEDLADFEFDGGGPRATERTLLRSGNSFMFGAPSAAGEPTVEGAEGWFSWPVHDGQKICPKADMVYCWKVTAVETGYSLLFYTGPDEKTFELEPGTGVARFHYAHHGTTNEVEAKLKSYEKPSR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.