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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005471 Open in IMG/M |
| Scaffold ID | Ga0070698_100020283 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6966 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Asticcacaulis → unclassified Asticcacaulis → Asticcacaulis sp. AC402 | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001432 | Metagenome / Metatranscriptome | 696 | Y |
| F085014 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070698_1000202832 | F001432 | GGAGG | MLKKDYVRDGNRKIMASITTGFTDTSAVVRDEGNRVSGRTSERFHTTRDEHGNLVSINSSDPGLLIGRKK* |
| Ga0070698_1000202833 | F085014 | GAG | MTTRSPLPTETIECPLCSGAGKLKRTEVLDRLGVKDFARVAQLSAEEAFRLFQNKHNHEYESAWARFETELAKRTAEIRERHKDELRITQSERDAVTRRVEDCLREVAQLQGRNQQLEAEMSKVARIGKREEMDFADEARTWPGIVVSEKLPRNGDFLLAYRDQSGAATEPRMVIDNKDKATVTEGDIKNLIRDARERRIAVGIIVAREDSQLRQLDRERRWDQEDGVWILRTTRCWLPRDLEVLKPVFERMRTEGPDFLQKNSALAEEVRRTFVDLDEVEKHLKKAAQAIDAASGLTKKYRGRLQALCDGVAQLSDPGLCQTGAD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |