NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074211_122462

Scaffold Ga0074211_122462


Overview

Basic Information
Taxon OID3300005487 Open in IMG/M
Scaffold IDGa0074211_122462 Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Washington, Seattle, Washington, USA - Methanol enrichment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)870
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa

Source Dataset Sampling Location
Location NameLake Washington, Seattle
CoordinatesLat. (o)47.63458Long. (o)-122.26655Alt. (m)Depth (m)63
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021517Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0074211_1224621F021517N/AMKLKHLLENSTEHAYTPLTVYEKKNMVETIKSYNEYRKGLKADGVYETAQKIMEAVNLAERYALKECGDWMEAKMVERDMKEIKRDAAKMYEEAQKMKAIEKQLEMLYEEVGRRLERYFEIADQVNEAPQAYQTQGQPSSVSIASLG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.