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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005503 Open in IMG/M |
| Scaffold ID | Ga0068671_1034270 Open in IMG/M |
| Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5829 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002970 | Metagenome / Metatranscriptome | 517 | N |
| F005302 | Metagenome / Metatranscriptome | 405 | Y |
| F037517 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068671_10342701 | F002970 | N/A | GLTAQYNSVVVPVRRLTSQPNWSDAAQLPVRIIPALGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGDVQLLNVSGIVDVVKYGERAYEGATVTTRFAHLVRAPSA* |
| Ga0068671_10342702 | F005302 | AGGAG | MAHSGVISGLYAGNFAVEISTDGTTWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA* |
| Ga0068671_10342705 | F037517 | GGAGG | MRVRQIGTLVFDSNTNIVVDADVQDAPGIGFHINNLYDPQPFAVEIAFKRATRQQALEAVNALARELFSYAQRRQDLRAGIAGGAPVIIEDAAGGATLKSYLRDGSVTLLGVETTATGVIARVRATGTLVASFINYAAATTSLTSLLPYERRVIALSGASDAYLYKNNLFYIVSNMSGLYNALLAVETLESATAASRIAAINPATATSGITLENWNAGWATLTRANFSSATNGTITFNITTALPFDVYRLFVEISCPSTPESTARYSVAWGGQPQIYETIAGDRSWYTPALFVRREAAMQLTLNIENVPTGTLAMPLILIPTDGVFVWNVITSPTFASFHSVAPQSDPLRPLETSPDGAVYGTPGFVSGRNIAVFNGVMAQTISGASASLTITSRRIEPAAFA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |