Scaffold Ga0077121_10942990

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077121_10942990

Scaffold Ga0077121_10942990

Overview

Basic Information
Taxon OID	3300005511 Open in IMG/M
Scaffold ID	Ga0077121_10942990 Open in IMG/M
Source Dataset Name	Combined assembly of arab plate scrape MF_Col (Combined Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	515
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095729	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077121_109429901	F095729	AGGA	MKTSLRTFAFASTLLVTAAFPLLSHAQDVRREDRVTHYLEADIIDSNKDHLVSKKEFMDAMSKSWDMHMSDAQKMAPDAKAPKDKMTLQQYLEFSKMFGLNIGG*

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