NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1004411

Scaffold Ga0074648_1004411


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1004411 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)11225
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003028Metagenome / Metatranscriptome512Y
F049046Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0074648_10044113F003028N/AMKSTYITVVGNLPVRFDLEQTKHLGPVIASANSNKSIIFDYATVNTETNLQDMLNSASFRGAELLVPEQLFKKYVFFDGITCMPDFPGLKSYDIDPEKCSPQTLALMLAVYLRQTMVFLLGYDISNPIELTRLKSIALANPHTKFMYICNPPRTHQLDDLENGFCDSYIKLQEFIDRAK*
Ga0074648_10044117F049046N/ALIPGCSYGVVYSQIESELKQLFGVDEIFNISNQGGSPDRQIRSTIEWIAQNGKPDMVIMPVSYAYRFDLPIAEKMDPIHNKHYRCVWHMDLDKNYGTRKPIDPKMDRDILQTYLKTGAVVHENEYPAHDNLFTKLLTFQAYLEHNEIRHLIFDTGNYYSNSLKEHQPGMQKKVLVENCKGIYKFFTFCSNVWMYEQLTDQEKIDYVPWYKPQKNIPIGKIIPLTEAAIIHHNKHQVLKLLRHLKDQGAVHGGP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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