NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1024062

Scaffold Ga0074648_1024062


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1024062 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3279
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085400Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0074648_10240623F085400GAGMASIVDNPKYGEGHQIVLKDKLSGVMATKFRQMGYMPGKDKFKITLKKTPKENKYLEVAKGNKSIYLIDKANRKLLLEGSETSINGLFNHFSTNAKSNTNLLTEIKETFSLEVFKAAIESNKKYKEDDLIKIVDKQIRGTVDNYDTVYFDSAYKQLDELKKYVKKKGYDYERQGGPRTKDLYTVARKLTGKLSDNWNPADVWMIQKNFNMKPLLESKTSSDLNSRLTDAFNKRDIIPVSLKQVLQPRAKSSIIDPSNLMKQKLDLDLKFDRVDLSDSYNNFIVITKSGFAIRCGFKASATTLNVSLEGRFISAGFQTGAVDAKVYTAEVRDKHNYNLRSGAVATSDYVTAKRELKEMFEKYPRLSNSDQLQNYNQAIKLFDKGNKLTKDRFSNLMSYMYSFIMKPKKFEEHMKFCYFTSKKLTTDSGIYLIIQ*
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