Basic Information | |
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Taxon OID | 3300005512 Open in IMG/M |
Scaffold ID | Ga0074648_1045684 Open in IMG/M |
Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1967 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005325 | Metagenome | 404 | Y |
F034401 | Metagenome / Metatranscriptome | 175 | N |
F047656 | Metagenome | 149 | N |
F056176 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074648_10456841 | F056176 | N/A | AKALVPLSIKLYEGRDILKLVNREPVSPIAESWTTIQEHLVNVT* |
Ga0074648_10456843 | F034401 | GGAGG | MALQYDYTALDTEGWTKEQHDSAANFCWTMSAIDMGTVTKENQDEVIFRIMFLQELGLGPWTEKYSLIEVKGIVHGMRGYKCNVAYDPRYKFIRRWVKAAENWLEEKIMKGEK* |
Ga0074648_10456845 | F047656 | GAGG | MKIETIEELKKLMKDLGASEETTSDGFTFIELDSKNLKCPEASKGCKPHGWPRGNPKWK* |
Ga0074648_10456846 | F005325 | AGG | MKKRKIKRGDLLPWFLEDHNTLPAWYIKDCQEFFEWLKQSNKDRKRLN* |
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