Scaffold Ga0077120_1003777

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077120_1003777

Scaffold Ga0077120_1003777

Overview

Basic Information
Taxon OID	3300005513 Open in IMG/M
Scaffold ID	Ga0077120_1003777 Open in IMG/M
Source Dataset Name	Combined assembly of arab plate scrape CL_Cvi (Combined Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18479
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024826	Metagenome / Metatranscriptome	204	Y
F040712	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077120_100377710	F024826	N/A	MADATPYFGIAPFVLGMSRELVRAAAGQPDTVETSQDDEGGDVETWFYQGGDVELEFEAVADAKLESITAWSSDITINGVALIGADLGDLPGLARAADIHDLELTDDFADSGQCWQSEQHGLMLWVAKGKVVNLTIFPRFDDSGEEPQWPE*
Ga0077120_100377717	F040712	AGG	MATAEFRRLASMSLRSFIVRRCLQSCLKATGLRVVNLPHVVDARQHVDPPVRLDAGYLVVDRRAFARITFSRGADDDAGPSHVTGFATLSGVLRAICAERIGVAGRAAIPGPRRAVELRREGRWQEVLEASERVEAPMRARLDAWLRGWQFKAYLMALRLLKQF*

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