Scaffold Ga0070374_10306818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070374_10306818

Scaffold Ga0070374_10306818

Overview

Basic Information
Taxon OID	3300005517 Open in IMG/M
Scaffold ID	Ga0070374_10306818 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	805
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F073544	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_103068181	F000671	GAGG	MEKILCYCCNKTKNKLNLKKSTLIPINLFMCESCISSKFEPRWVIILAGRQLGSDSVKEFIIKKRYCGADISASELLV*
Ga0070374_103068182	F073544	AGG	VREYYEVINIVFIHEQRLWGTCDSLGLYASKIKYQKDGIEYEEMLDNEEFTVMEEIVIEHQEEDN*
Ga0070374_103068183	F000473	AGG	MEFINKDKDHFKHGINLWNGEPNKPVFYTKEMSLKIRELRKPVPDLMLDVVQYPEFLAVRLYEDNFVQYEGSKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN*

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