NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070699_100002911

Scaffold Ga0070699_100002911


Overview

Basic Information
Taxon OID3300005518 Open in IMG/M
Scaffold IDGa0070699_100002911 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15238
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002514Metagenome / Metatranscriptome552Y
F014881Metagenome / Metatranscriptome259N

Sequences

Protein IDFamilyRBSSequence
Ga0070699_10000291116F002514GAGGLRDRDVMNLLDQIELYVLGIGRERTAQKDYWLFIYDSMKSGLLMTRAMEKHLQYKLKGLGIQNNQR*
Ga0070699_1000029117F014881GGAGMGFRTGFFKLKRSLNNLAFRMSFVKLAPGSSRPLLPVASFVILAFTVFVLAGGLFILVGAGTSVSLLNVQQGLGFVYPHDINNQTPAEGVFIALLYAFGVVGLYMMFMSTRNAYRPKRAYGFLGFGMLLSFVFMATAYFVLYQKLM*
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