NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070699_100004493

Scaffold Ga0070699_100004493


Overview

Basic Information
Taxon OID3300005518 Open in IMG/M
Scaffold IDGa0070699_100004493 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12341
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009061Metagenome323Y
F014057Metagenome / Metatranscriptome266Y
F043324Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0070699_10000449311F043324N/AMLKAARLDGETFKELRDDPSVTAQAISLIAIIGLCYGAGLGLFGFLIVGTSPFEILTITLLGLLAAVLVALGWSATTFLIVTKIFRRKMSYLGLARPFFFSWAPGLLFILMSSPIPTISETVRVAAAAWIAIASVFAVKYAAEFSTQQSMLTFIMCILVLVLVLSIASIC*
Ga0070699_10000449312F014057GAGMVQDKILCFVCAVKGFERTFSTYYELQEHLYKDHDMNKDPAMEIFNKYKPLTSKSAIE*
Ga0070699_1000044936F009061GAGMEGTKYPEHFDDFLVYLCEKYHVDKSRLFVEYSSGPPPPLKGPRAGYYEGLLSFREKDGHTEFLITVFKASREPLLTLAHEFGHLVKNLKSGSFDKHLRPPDDATERMLDRQAMNDLAEFQELDRP*
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