Scaffold Ga0070699

Basic Information
Taxon OID	3300005518 Open in IMG/M
Scaffold ID	Ga0070699_100005222 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070699_100005222 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11411
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11411

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002124	Metagenome / Metatranscriptome	591	Y
F004767	Metagenome / Metatranscriptome	424	Y
F004800	Metagenome / Metatranscriptome	423	Y
F019697	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070699_10000522211	F004800	N/A	MATLLPKVLEIERRQLADYARVDYAITKGEDEIAALEELCLGPNELQRETSVVRDRTVLAVREVRNNMAKRAITAKNMEGSLIESLRQRSRFAVVDTVDASLRARCFASLECIPTLTLLCHFIDAIKAGDVARAESVRFEFQTRENRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPMDHGPDRSRASLLGARAIPPRERAIVSVRSAFAA*
Ga0070699_10000522214	F019697	N/A	MRRELKLLLIEMNVLRVEVEQLRAMEREARNTEEFLSGSVNRLMESRDHWRQEAERFRAFIAQVPPWSLFWWRCVDAFKTWRKPTDRGLHWA*
Ga0070699_10000522215	F002124	GAGG	MADQNEAKTKTIGFLPIEKVQTLKGWEEYVDKSTKLSALRTEAQKAKNSVRDALKERLSENGDMDFAVEGDRIRVFRVFRKQQQGRRTRVLDLSSSFREQRLEREAEAKGQSDDRGVCEETEDVTPHLNPMTEEAAASLDPVTERLLVLMREKGQR*
Ga0070699_1000052229	F004767	N/A	MSVPLFRMVTLVLAVLVLGAATTASARPKKHRAERTATPITTCDGTPIIMQGIDCKKGSTGGEEQATTRAQRPRVTARGSGGSYAPARLSTPSLPLSQPSAGVYIPPPVNNPSAQINQLNHSFPLNGGLGLNPTNRDSYIRYNLTR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070699_100005222

Overview

Ecosystem & Geography

Associated Families

Sequences