Scaffold Ga0070699_100006022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070699_100006022

Scaffold Ga0070699_100006022

Overview

Basic Information
Taxon OID	3300005518 Open in IMG/M
Scaffold ID	Ga0070699_100006022 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10601
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011288	Metagenome	292	N
F023817	Metagenome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070699_10000602210	F023817	GAG	MAPTSMVNTVQKENVSLEDRVFKLKLQWMMAKDDNERKQISEEIRRLIQTTPSK*
Ga0070699_1000060224	F011288	GGCGG	MNQSPDDDPWLGTLERFPTIYHARASWLYDINTESLQKAIFSGLHSLAQGKKSLEITVADIPGYQSGGVAFKFGVGNKDGFDILDNKEAERVIQRIEEKGTFGTLDLVFHLHYSVNDGKRHKVHEDQYLVRLTFQPGRVELLLHHLKGVRRIAPDELVRILLSATNHELGRNKYPELELESLSST*

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