Scaffold Ga0070699

Basic Information
Taxon OID	3300005518 Open in IMG/M
Scaffold ID	Ga0070699_100048507 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070699_100048507 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3675
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3675

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070699_1000485072	F034511	N/A	LSTGAKRKRRPAQKGVQAVFTPSTNWKGRAQLALGLVALGAGTASWIYTTRELRGFGLGNLIPWNESVSAILLPISIPLLIGGVGLCTYFLAMRRTWRASSRIESALYELEALVGQRNGVSGASSEARVVTEANSRKRSFHLPSFNIVSKALAIALVEAVVLIVIYGGLVQEYASNVNMQNWIRANFAPGTYLLNYNAMLVLAGLLGVLIFQLLPRKLQSRKLQS*
Ga0070699_1000485073	F001571	GAG	MTDLAPERRLALIHRVIVPANESPEEYAILVTDRRSIFIRQEKTRANFWLRREMSYGTALITDIVPKTLADYEQTGLGSLAGDSLNFVVLHEAVISLALKKESQKPRRYDFFVRLTMRMQKEEFQVYDFEMSYQKSSNMETLIKFYMVPLGAYLKPRRQTQTREAVLREYAMDALGIFRKVLSAKVVSS*
Ga0070699_1000485074	F020766	N/A	MDLVTGGIVLFTIMAAAGIIPLIMAIKVKVRSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLLLLIGLGAYYSKVGIA*
Ga0070699_1000485075	F017116	GGA	MASDPNIAMFETFNLVLILIAFATFARLAFKGKSLGSFRFQLSIFLLIWVISEIPHIGESLGLLSAGGYEDTGLYLHAASMAVFAMFVGWRSLRFLSFHPPAPITTVSLPTDTPKVLKS*
Ga0070699_1000485076	F011479	AGG	MSAVSFDDLVSQSVSETMSKILGETTWKSVNFFFDTKTAAREPETFAALLDKVFGYTSKVLQKKIAEALLGKVGAVQPSNTSDFRQIIRLARARFPRTAVPGHLGS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070699_100048507

Overview

Ecosystem & Geography

Associated Families

Sequences