Scaffold Ga0068877

Basic Information
Taxon OID	3300005525 Open in IMG/M
Scaffold ID	Ga0068877_10005893 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005525 Open in IMG/M

Scaffold ID

Ga0068877_10005893 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9378
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9378

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F001507	Metagenome / Metatranscriptome	681	Y
F005092	Metagenome / Metatranscriptome	412	Y
F023106	Metagenome / Metatranscriptome	211	Y
F034902	Metagenome / Metatranscriptome	173	Y
F068492	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000589311	F000684	AGGA	MTLGGYTYQIGDLFTTSKTGVTGRIASFAPMSNSVTRVSLVLANGSRRLAMVKTSK*
Ga0068877_1000589316	F001507	N/A	MTQTYKPYTIDELVTEIYEDNLSHFEFEENMGGEPCDCHLHNTMNTIMQYWGE*
Ga0068877_1000589318	F068492	GAGG	MMNTTELEPRLQKLIDLGESGTDILHGELKNLMYEAENELIEAQRIEEENDYSDAMESMERKYWEGQCDALSHVYGLTYALAFAISERRSKQ*
Ga0068877_1000589322	F023106	AGGAGG	MRIRRTLTAEEKVANKLGNEISDLRVDLELVGQYLAQSQPYVVYNRLQVIAESAKETKEGTNYATNNF*
Ga0068877_100058933	F005092	AGGA	MDKLEYALKVIANCDLCYGKGYQGWANGEDFDIEDCECNIYGIILDDDGSVIYDNGLLSEPELFLTREAN*
Ga0068877_100058936	F000808	GGAGG	MEYTYSLTTSYDGELVNTLRVSDMMTAVDAWTKCVDCGDAKEYATYNLSDPTGKMYTKTFYRNGEVVVR*
Ga0068877_100058938	F034902	AGG	MLSTALAIQTATQDAVMDESVMVMASAMYHNKDEMTTEDFAKALFMYSAHLSALTATLVSHACLTESQIDEMIETIKEFDALGKDITNGNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068877_10005893

Overview

Ecosystem & Geography

Associated Families

Sequences