NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068877_10094084

Scaffold Ga0068877_10094084


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10094084 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y
F031384Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0068877_100940842F000311AGGAMYFELTAPNQIALQRAFWSAEMMGLDPMLISPLTFNIGTGSIEKVSSIRDTYNLKETYVSDYEPTGYTRR*
Ga0068877_100940843F007470AGGAGMDYQDGFEDGVKFAREVIIANIRLWAESSDEGQVMDDIADRIEFGTVDYDL*
Ga0068877_100940845F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHQMLGKLADAVIAARPRWSDPAYATRIAISQIIGNDWSDETGYGLHVNEISDNEHKIAIVDWDQQIFSLHEEDTFANTDNKVRGMKNEAIFTMDLSTFCEKYALEGMLVN*
Ga0068877_100940846F031384AGGAMPNWCYNGLTIEGNPEQVNKLVEQMNNPYKQVHDSWNMETQQMEKKLSTYPNPVFAFHNIYNHIQDGVSDEVYLGQPPR
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