NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073909_10001264

Scaffold Ga0073909_10001264


Overview

Basic Information
Taxon OID3300005526 Open in IMG/M
Scaffold IDGa0073909_10001264 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7795
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014543Metagenome / Metatranscriptome262Y
F022713Metagenome213Y
F029263Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0073909_100012643F014543GGAGVPKTNNTGKRGKAPFTKDKRRRHHHFLVTVAYADGEKFGRVYTDKEKASRFAERQRRSPVVKSVRVSQVS*
Ga0073909_100012644F022713GGCGGMMIMNMPKQPPILEDLRNHSAEELAELRTLLSIGAAMRPDPRRPGFFEVSGIDRVYYIFKYPNGCKILLLGVWDRDPVAELVACSCPAA*
Ga0073909_100012646F029263N/AMGACVCGMFCYPIRGVPLTLQEKPLKLEVMQDSGSNSGNTPTAEVPVSELRRGRRAKMARLLRVRPSEPRDDHFEDFPTSVNASKHGIYFTSRLANYYKGMRVFVTFPYTSAHDPMNSDYVAEVVRIETLPNKKFGVAVDLKMTVNMSSNTKAGTRA*
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