Scaffold Ga0073909_10426486

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073909_10426486

Scaffold Ga0073909_10426486

Overview

Basic Information
Taxon OID	3300005526 Open in IMG/M
Scaffold ID	Ga0073909_10426486 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	629
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104807	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073909_104264861	F104807	N/A	ASGIEKGTSYNFSSWTGGGFSNNREFRDSALGKATMKAIADIVEHVKKLDVGPGGRTLAAESAAAEKAATLRNVKGSVQMVDGKEIWVSLGSKNGFQKGDKLKIYKPVEKKNSKGVVVATTYEVIGEITLVKVQKDKSMGEYSGAGQISEDWAVTDASVDIEKLD*

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