Scaffold Ga0068876

Basic Information
Taxon OID	3300005527 Open in IMG/M
Scaffold ID	Ga0068876_10000325 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005527 Open in IMG/M

Scaffold ID

Ga0068876_10000325 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38181
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (63.53%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Associated Families	15

Scaffold Components

Scaffold Length (bps)

38181

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (63.53%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F002243	Metagenome / Metatranscriptome	578	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004314	Metagenome / Metatranscriptome	444	Y
F004546	Metagenome / Metatranscriptome	433	Y
F007569	Metagenome / Metatranscriptome	348	Y
F009071	Metagenome / Metatranscriptome	323	Y
F013172	Metagenome / Metatranscriptome	273	Y
F020144	Metagenome / Metatranscriptome	225	Y
F020347	Metagenome / Metatranscriptome	224	Y
F023807	Metagenome / Metatranscriptome	208	Y
F027061	Metagenome / Metatranscriptome	196	N
F032934	Metagenome / Metatranscriptome	178	Y
F048809	Metagenome / Metatranscriptome	147	Y
F078408	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000032510	F023807	GAG	MEMVRLVDVKLKYRLELTDEEKEIKDHIMEFQHQVKINEMRDKFEKCLGLDEQG*
Ga0068876_1000032515	F003331	GAG	MTLTEKAQIYKNVWCCAYRRRHAAKLKEDWDLYQREHQTVLMCLKIAKWTIFDSENHHYLKKRKVH*
Ga0068876_1000032516	F001881	GAGG	LTERSQSLMNQIWEARNAGADTEEKLIASVLRIAAENIQFYTAQNDLIVLDKNDMLQLAQELEE*
Ga0068876_1000032524	F009071	AGGAG	MPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDQCRQYAYDNYTDKEQGEMCLMDWEAREWDV*
Ga0068876_1000032526	F020144	AGGAG	MSNFYTLLPGTDVLRSKIDVFTWTNPADENETHRVELTVDNGGIFVTSCSGGAREDISIEQKDLAIALARAILEAYGVG*
Ga0068876_1000032530	F027061	GGA	MTTRALQILESTMELSMRPKSGDRQKLIARVIREAADRLCTDWGELEHPVDVLNKIADEVEAL*
Ga0068876_1000032531	F020347	GAGG	MSSKTYLQYVAIPALAFFISAIVSYNLTPERTPQHNSTVSGSSGDLKCTSSCVVKEQ*
Ga0068876_1000032538	F007569	GGAGG	MDFTSEQYRLIYTAVRRYQEQSTYDPKTYVECGEVLDELFDSVYTQRREQPT*
Ga0068876_1000032539	F004546	GGAG	MEHTEEFPFDGFPWKLVYKEGNETRKCYFESEAHRQKHIDRYKLKKKDIKLSYKFEE*
Ga0068876_1000032541	F078408	GGA	MTLRTFTDKNGNEWNWEETPEVIAALKAYQKFAGNYPGPLYAPHPYINKDGKETN*
Ga0068876_1000032543	F048809	AGG	MMIRRFVDWFFAPSQKLIVEEIDTYSKLIELQDRITALEAENVETSNCLYELMNSIDAVDARIDILTAEQWIKETKDNV*
Ga0068876_1000032563	F032934	N/A	MMDKPILIKHFARRWYLYWADNGRTIASFPSEFEAYSARRSMIEYNKTGGIS*
Ga0068876_1000032564	F013172	AGGAGG	MSYYWTIKMNNAANRRVEKLTQDGVVVNTSTHEGRKVIGYNYLELAVDYDEVTE*
Ga0068876_1000032569	F002243	GAGG	MIDFPTLQSKDGTMLVGFYPVQTPFGDISTEWCMQILSWKGVDQVSKKYLNRVEKAVAIRERLAYDYVVTGDNQNLPQTGNPFYGAC*
Ga0068876_1000032583	F004314	GAG	MYDDYDLDYTYASDYTYDLDEYYAQDADLDEDYARDGQDYETLAYRHYA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068876_10000325

Overview

Ecosystem & Geography

Associated Families

Sequences